Transcript: LPP-AS2:1

Basic information

LNCipedia transcript ID: LPP-AS2:1 
LNCipedia gene ID: LPP-AS2
RefSeq ID: NR_036497
Location (hg38): chr3:188151206-188154088
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2883 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT093906; NR_036497; NR_036497.1
Alternative gene names: ; MYCLo-5; MYCLo-6; LPP-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2194 non-coding 
CPAT coding probability 8.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LPP-AS2:1 yes no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCL6-8:1
4.0 LPP-AS2:1
4.1 LPP-AS2:1
5.0 LPP-AS2:1
5.1 LPP-AS2:1
5.2 LPP-AS2:1