Transcript: LRP1-AS:2

Basic information

LNCipedia transcript ID: LRP1-AS:2 
HGNC Gene Symbol: LRP1-AS    
HGNC Full Gene Name: LRP1 antisense RNA
Ensembl Gene ID: ENSG00000259125
Ensembl Transcript ID: ENST00000554476
Location (hg38): chr12:57146490-57147529
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 325 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554476.1; RP11-545N8.3-002; OTTHUMT00000412793.1; NONHSAT028881
Alternative gene names: ENSG00000259125.1; RP11-545N8.3; OTTHUMG00000171280.1; LRP1-AS;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -511.2791 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LRP1-AS:2 yes no no no

Available literature

  1. Yamanaka (2015), Antisense RNA controls LRP1 Sense transcript expression through interaction with a chromatin-associated protein, HMGB2., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STAT6-2:2
4.0 LRP1-AS:2
4.1 LRP1-AS:2
5.0 LRP1-AS:2
5.1 LRP1-AS:2
5.2 LRP1-AS:2