Transcript: LRRC3-DT:9

Basic information

LNCipedia transcript ID: LRRC3-DT:9 
HGNC Gene Symbol: LRRC3-DT    
HGNC Full Gene Name: LRRC3 divergent transcript
Ensembl Gene ID: ENSG00000229356
Ensembl Transcript ID: ENST00000426578
RefSeq ID: NR_047476
Location (hg38): chr21:44450986-44455284
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 784 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028957; ENST00000426578.1; LRRC3-AS1-001; OTTHUMT00000098090.1; NONHSAT082520; NR_047476; NR_047476.1
Alternative gene names: XLOC_014118; linc-C21orf2-2; ENSG00000229356.1; LRRC3-AS1; OTTHUMG00000040842.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.9445 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LRRC3-DT:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPEAR-1:1
3.1 lnc-TSPEAR-1:1
4.0 LRRC3-AS1:1
4.1 LRRC3-AS1:1
5.0 LRRC3-AS1:1
5.1 LRRC3-DT:2
5.2 LRRC3-DT:9