Transcript: LRRC75A-AS1:48

Basic information

LNCipedia transcript ID: LRRC75A-AS1:48 
HGNC Gene Symbol: LRRC75A-AS1    
HGNC Full Gene Name: LRRC75A antisense RNA 1
Ensembl Gene ID: ENSG00000175061
Ensembl Transcript ID: ENST00000580770
Location (hg38): chr17:16439037-16478678
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 572 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580770.1; C17orf76-AS1-020; OTTHUMT00000445760.1; NONHSAT145951; ENST00000580770.5
Alternative gene names: ENSG00000175061.10; C17orf76-AS1; OTTHUMG00000058990.3; ENSG00000175061.13; FAM211A-AS1; ENSG00000175061.17; LRRC75A-AS1; MGC40157


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -166.1786 non-coding 
CPAT coding probability 5.00% non-coding 
Bazzini small ORFs 1 coding 
orfFrame11.4871935
covF1Prop0.431372549
seqAAMEGHICQSLESAKAGTRFPGPQWGCANPRELGCKFVKNQHHVWQLSIGARSLP

In stringent set: no

Locus conservation

Locus conservation?
LRRC75A-AS1:48 no no no no

Available literature

  1. Wang (2018), A three‑lncRNA signature for prognosis prediction of acute myeloid leukemia in patients., Mol Med Rep
  2. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.
  3. Zhang (2014), Species-specific alternative splicing leads to unique expression of sno-lncRNAs., BMC Genomics
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPV2-1:13
4.0 LRRC75A-AS1:48
4.1 LRRC75A-AS1:48
5.0 LRRC75A-AS1:48
5.1 LRRC75A-AS1:48
5.2 LRRC75A-AS1:48