Transcript: LRRC8C-DT:29

Basic information

LNCipedia transcript ID: LRRC8C-DT:29 
LNCipedia gene ID: LRRC8C-DT
Location (hg38): chr1:89610851-89633465
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1320 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231999.2|HBMT00000068141.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.8399 non-coding 
CPAT coding probability 10.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LRRC8C-DT:29 no no no no

Available literature

  1. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GBP5-2:16
5.0 lnc-GBP5-2:16
5.1 LRRC8C-DT:2
5.2 LRRC8C-DT:29