Transcript: LRRC8C-DT:48

Basic information

LNCipedia transcript ID: LRRC8C-DT:48 
LNCipedia gene ID: LRRC8C-DT
RefSeq ID: NR_033981
Location (hg38): chr1:89624849-89632894
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 789 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000019; NONHSAT004363; NR_033981; NR_033981.1
Alternative gene names: XLOC_000909; linc-GBP5-2; FLJ27354


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.3964 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LRRC8C-DT:48 no no no no

Available literature

  1. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GBP5-2:7
3.1 lnc-GBP5-2:8
4.0 lnc-GBP5-2:8
4.1 lnc-GBP5-2:8
5.0 lnc-GBP5-2:8
5.1 LRRC8C-DT:21
5.2 LRRC8C-DT:48