Transcript: LRRC8C-DT:52

Basic information

LNCipedia transcript ID: LRRC8C-DT:52 
HGNC Gene Symbol: LRRC8C-DT    
HGNC Full Gene Name: LRRC8C divergent transcript
Ensembl Gene ID: ENSG00000231999
Ensembl Transcript ID: ENST00000526694
Location (hg38): chr1:89626261-89632747
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 851 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526694.1; RP5-1007M22.2-003; OTTHUMT00000387139.1
Alternative gene names: ENSG00000231999.2; RP5-1007M22.2; OTTHUMG00000010130.3; ENSG00000231999.6; FLJ27354; LRRC8C-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.7903 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LRRC8C-DT:52 no no no no

Available literature

  1. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GBP5-2:10
4.0 lnc-GBP5-2:10
4.1 lnc-GBP5-2:10
5.0 lnc-GBP5-2:10
5.1 LRRC8C-DT:25
5.2 LRRC8C-DT:52