Transcript: LUARIS:6

Basic information

LNCipedia transcript ID: LUARIS:6 
LNCipedia gene ID: LUARIS
Location (hg38): chr7:43508728-43522554
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2928 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231638.1|ENST00000436105.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -51.5358 non-coding 
CPAT coding probability 10.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LUARIS:6 yes no no no

Available literature

  1. Nishitsuji (2016), Long noncoding RNA #32 contributes to antiviral responses by controlling interferon-stimulated gene expression., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C7orf44-1:3
5.0 lnc-C7orf44-1:3
5.1 LUARIS:3
5.2 LUARIS:6