Transcript: LUARIS:7

Basic information

LNCipedia transcript ID: LUARIS:7 
HGNC Gene Symbol: LUARIS    
HGNC Full Gene Name: lncRNA upregulator of antiviral response interferon signaling
Ensembl Gene ID: ENSG00000231638
Ensembl Transcript ID: ENST00000436105
RefSeq ID: NR_038276
Location (hg38): chr7:43508728-43522542
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2916 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000436105.1; AC011738.4-001; OTTHUMT00000338774.1; NONHSAT120298; NR_038276; NR_038276.1
Alternative gene names: ENSG00000231638.1; AC011738.4; OTTHUMG00000155206.1; LUARIS; LOC100506895


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.5358 non-coding 
CPAT coding probability 17.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LUARIS:7 yes no no no

Available literature

  1. Nishitsuji (2016), Long noncoding RNA #32 contributes to antiviral responses by controlling interferon-stimulated gene expression., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C7orf44-1:1
4.0 lnc-C7orf44-1:1
4.1 lnc-C7orf44-1:1
5.0 lnc-C7orf44-1:1
5.1 LUARIS:4
5.2 LUARIS:7