Transcript: LUCAT1:16

Basic information

LNCipedia transcript ID: LUCAT1:16 
HGNC Gene Symbol: LUCAT1    
HGNC Full Gene Name: lung cancer associated transcript 1
Ensembl Gene ID: ENSG00000248323
Ensembl Transcript ID: ENST00000513492
Location (hg38): chr5:91303029-91312495
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 433 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009723; ENST00000513492; ENST00000513492.1; RP11-213H15.3-003; OTTHUMT00000369758.1; NONHSAT102746; ENST00000513492.5
Alternative gene names: XLOC_004924; linc-LYSMD3-2; ENSG00000248323; RP11-213H15.3; ENSG00000248323.1; OTTHUMG00000162611.1; LUCAT1; ENSG00000248323.5; SCAL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.5361 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LUCAT1:16 no no no no

Available literature

  1. Thai (2013), Characterization of a novel long noncoding RNA, SCAL1, induced by cigarette smoke and elevated in lung cancer cell lines., Am. J. Respir. Cell Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARRDC3-1:12
3.1 lnc-ARRDC3-1:12
4.0 LUCAT1:16
4.1 LUCAT1:16
5.0 LUCAT1:16
5.1 LUCAT1:16
5.2 LUCAT1:16