Transcript: LY6E-DT:25

Basic information

LNCipedia transcript ID: LY6E-DT:25 
LNCipedia gene ID: LY6E-DT
Location (hg38): chr8:142980492-143018395
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6908 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000247317.3|MICT00000353117.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 69.2918 coding 
CPAT coding probability 99.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LY6E-DT:25 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CYP11B2-1:16
5.0 lnc-CYP11B2-1:16
5.1 LY6E-DT:6
5.2 LY6E-DT:25