Transcript: LY6E-DT:38

Basic information

LNCipedia transcript ID: LY6E-DT:38 
LNCipedia gene ID: LY6E-DT
Location (hg38): chr8:142981707-143012600
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 911 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT129507
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.7381 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LY6E-DT:38 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYP11B2-1:11
4.0 lnc-CYP11B2-1:11
4.1 lnc-CYP11B2-1:11
5.0 lnc-CYP11B2-1:11
5.1 LY6E-DT:19
5.2 LY6E-DT:38