Transcript: LY6E-DT:39

Basic information

LNCipedia transcript ID: LY6E-DT:39 
HGNC Gene Symbol: LY6E-DT    
HGNC Full Gene Name: LY6E divergent transcript
Ensembl Gene ID: ENSG00000247317
Ensembl Transcript ID: ENST00000518024
Location (hg38): chr8:142994876-143012577
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 875 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518024; ENST00000518024.1; RP11-273G15.2-005; OTTHUMT00000380065.1; NONHSAT129511
Alternative gene names: ENSG00000247317; RP11-273G15.2; ENSG00000247317.3; OTTHUMG00000164752.1; AC105202.1; LY6E-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.6738 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LY6E-DT:39 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYP11B2-1:5
3.1 lnc-CYP11B2-1:5
4.0 lnc-CYP11B2-1:5
4.1 lnc-CYP11B2-1:5
5.0 lnc-CYP11B2-1:5
5.1 LY6E-DT:20
5.2 LY6E-DT:39