Transcript: LYPLAL1-DT:5

Basic information

LNCipedia transcript ID: LYPLAL1-DT:5 
HGNC Gene Symbol: LYPLAL1-DT    
HGNC Full Gene Name: LYPLAL1 divergent transcript
Ensembl Gene ID: ENSG00000228063
Ensembl Transcript ID: ENST00000441331
Location (hg38): chr1:219086602-219173961
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 724 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441331; ENST00000441331.1; RP11-135J2.4-001; OTTHUMT00000098809.1; NONHSAT139924
Alternative gene names: ENSG00000228063; RP11-135J2.4; ENSG00000228063.1; OTTHUMG00000041228.1; LYPLAL1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6784 non-coding 
CPAT coding probability 15.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LYPLAL1-DT:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC30A10-4:1
3.1 lnc-SLC30A10-4:1
4.0 LYPLAL1-AS1:1
4.1 LYPLAL1-AS1:1
5.0 LYPLAL1-AS1:1
5.1 LYPLAL1-DT:2
5.2 LYPLAL1-DT:5