Transcript: MAFA-AS1:4

Basic information

LNCipedia transcript ID: MAFA-AS1:4 
LNCipedia gene ID: MAFA-AS1
Location (hg38): chr8:143408204-143413832
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2445 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254338.1|MICT00000353475.1
Alternative gene names: RP11-909N17.3; TCONS_00014882


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 48.8508 non-coding 
CPAT coding probability 61.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAFA-AS1:4 no no no no

Available literature

  1. Xu (2014), Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MAFA-AS1:4
5.0 MAFA-AS1:4
5.1 MAFA-AS1:4
5.2 MAFA-AS1:4