Transcript: MAFTRR:1

Basic information

LNCipedia transcript ID: MAFTRR:1 
LNCipedia gene ID: MAFTRR
Location (hg38): chr16:79714743-79770930
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2862 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024736; NONHSAT143859
Alternative gene names: XLOC_012017; linc-MAF-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.5592 non-coding 
CPAT coding probability 8.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFTRR:1 no no no no

Available literature

  1. Ranzani (2015), The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4., Nat. Immunol.
  2. Roux (2015), LincRNA signatures in human lymphocytes., Nat. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAF-2:1
3.1 lnc-MAF-2:1
4.0 MAFTRR:1
4.1 MAFTRR:1
5.0 MAFTRR:1
5.1 MAFTRR:1
5.2 MAFTRR:1