Transcript: MAFTRR:11

Basic information

LNCipedia transcript ID: MAFTRR:11 
LNCipedia gene ID: MAFTRR
Location (hg38): chr16:79716725-79770563
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261390.1|ENST00000562921.1
Alternative gene names: linc-MAF-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -251.4543 non-coding 
CPAT coding probability 3.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFTRR:11 no no no no

Available literature

  1. Ranzani (2015), The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4., Nat. Immunol.
  2. Roux (2015), LincRNA signatures in human lymphocytes., Nat. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MAFTRR:11
5.0 MAFTRR:11
5.1 MAFTRR:11
5.2 MAFTRR:11