Transcript: MAFTRR:12

Basic information

LNCipedia transcript ID: MAFTRR:12 
LNCipedia gene ID: MAFTRR
Location (hg38): chr16:79657414-79770563
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1910 bp
Exons: 10
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261390.1|MICT00000136643.1
Alternative gene names: linc-MAF-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -57.5651 non-coding 
CPAT coding probability 18.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFTRR:12 no no no no

Available literature

  1. Ranzani (2015), The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4., Nat. Immunol.
  2. Roux (2015), LincRNA signatures in human lymphocytes., Nat. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MAFTRR:12
5.0 MAFTRR:12
5.1 MAFTRR:12
5.2 MAFTRR:12