Transcript: MAFTRR:3

Basic information

LNCipedia transcript ID: MAFTRR:3 
LNCipedia gene ID: MAFTRR
Location (hg38): chr16:79716725-79770563
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000562921.1; RP11-345M22.2-002; OTTHUMT00000434552.1; NONHSAT143863
Alternative gene names: ENSG00000261390.1; RP11-345M22.2; OTTHUMG00000176976.1; linc-MAF-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -251.4543 non-coding 
CPAT coding probability 5.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFTRR:3 no no no no

Available literature

  1. Ranzani (2015), The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4., Nat. Immunol.
  2. Roux (2015), LincRNA signatures in human lymphocytes., Nat. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAF-2:3
4.0 MAFTRR:3
4.1 MAFTRR:3
5.0 MAFTRR:3
5.1 MAFTRR:3
5.2 MAFTRR:3