Transcript: MAFTRR:5

Basic information

LNCipedia transcript ID: MAFTRR:5 
HGNC Gene Symbol: MAFTRR    
HGNC Full Gene Name: MAF transcriptional regulator RNA
Ensembl Gene ID: ENSG00000261390
Ensembl Transcript ID: ENST00000562921
Location (hg38): chr16:79715232-79770563
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1859 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562921.5
Alternative gene names: ENSG00000261390.5; MAFTRR; linc-MAF-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -65.5592 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFTRR:5 no no no no

Available literature

  1. Ranzani (2015), The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4., Nat. Immunol.
  2. Roux (2015), LincRNA signatures in human lymphocytes., Nat. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 MAFTRR:5
4.1 MAFTRR:5
5.0 MAFTRR:5
5.1 MAFTRR:5
5.2 MAFTRR:5