Transcript: MAFTRR:6

Basic information

LNCipedia transcript ID: MAFTRR:6 
HGNC Gene Symbol: MAFTRR    
HGNC Full Gene Name: MAF transcriptional regulator RNA
Ensembl Gene ID: ENSG00000261390
Ensembl Transcript ID: ENST00000567993
RefSeq ID: NR_104663
Location (hg38): chr16:79721312-79770532
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 685 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000567993.1; RP11-345M22.2-003; OTTHUMT00000434553.1; NONHSAT143864; NR_104663; ENST00000567993.5; NR_104663.1
Alternative gene names: ENSG00000261390.1; RP11-345M22.2; OTTHUMG00000176976.1; ENSG00000261390.5; MAFTRR; linc-MAF-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.0832 non-coding 
CPAT coding probability 10.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFTRR:6 no no no no

Available literature

  1. Ranzani (2015), The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4., Nat. Immunol.
  2. Roux (2015), LincRNA signatures in human lymphocytes., Nat. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAF-2:5
4.0 MAFTRR:6
4.1 MAFTRR:6
5.0 MAFTRR:6
5.1 MAFTRR:6
5.2 MAFTRR:6