Transcript: MAGI1-IT1:1

Basic information

LNCipedia transcript ID: MAGI1-IT1:1 
HGNC Gene Symbol: MAGI1-IT1    
HGNC Full Gene Name: MAGI1 intronic transcript 1
Ensembl Gene ID: ENSG00000272610
Ensembl Transcript ID: ENST00000460754
Location (hg38): chr3:65872815-65954558
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2567 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000460754.1; MAGI1-IT1-001; OTTHUMT00000351970.1; NONHSAT090291
Alternative gene names: ENSG00000240256.1; MAGI1-IT1; OTTHUMG00000158737.1; ENSG00000272610.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.945 non-coding 
CPAT coding probability 19.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAGI1-IT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRIG1-2:1
4.0 MAGI1-IT1:1
4.1 MAGI1-IT1:1
5.0 MAGI1-IT1:1
5.1 MAGI1-IT1:1
5.2 MAGI1-IT1:1