Transcript: MAGI2-AS2:1

Basic information

LNCipedia transcript ID: MAGI2-AS2:1 
HGNC Gene Symbol: MAGI2-AS2    
HGNC Full Gene Name: MAGI2 antisense RNA 2
Ensembl Gene ID: ENSG00000226978
Ensembl Transcript ID: ENST00000411616
RefSeq ID: NR_046689
Location (hg38): chr7:79008988-79012277
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 476 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000411616.1; MAGI2-AS2-001; OTTHUMT00000340442.2; NONHSAT121695; NR_046689; NR_046689.1
Alternative gene names: ENSG00000226978.1; MAGI2-AS2; OTTHUMG00000155511.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -303.893 non-coding 
CPAT coding probability 2.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAGI2-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHTF2-3:1
4.0 MAGI2-AS2:1
4.1 MAGI2-AS2:1
5.0 MAGI2-AS2:1
5.1 MAGI2-AS2:1
5.2 MAGI2-AS2:1