Transcript: MALINC1:54

Basic information

LNCipedia transcript ID: MALINC1:54 
LNCipedia gene ID: MALINC1
Location (hg38): chr5:140105412-140108605
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 529 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245146.2|FTMT21700050130.1
Alternative gene names: MA-linc1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -158.6431 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MALINC1:54 yes no no no

Available literature

  1. Bida (2015), A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01024:27
5.0 LINC01024:27
5.1 MALINC1:16
5.2 MALINC1:54