Transcript: MALINC1:63

Basic information

LNCipedia transcript ID: MALINC1:63 
LNCipedia gene ID: MALINC1
RefSeq ID: NR_102739
Location (hg38): chr5:140102922-140108012
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3138 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT104140; NR_102739; NR_102739.1
Alternative gene names: MA-linc1; LINC01024


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.188 non-coding 
CPAT coding probability 44.40% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MALINC1:63 yes no no no

Available literature

  1. Bida (2015), A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRG2-1:12
4.0 LINC01024:6
4.1 LINC01024:6
5.0 LINC01024:6
5.1 MALINC1:25
5.2 MALINC1:63