Transcript: MAMDC2-AS1:2

Basic information

LNCipedia transcript ID: MAMDC2-AS1:2 
LNCipedia gene ID: MAMDC2-AS1
RefSeq ID: NR_040076
Location (hg38): chr9:70153134-70175888
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1560 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT131800; NR_040076; NR_040076.1
Alternative gene names: ; MAMDC2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.1716 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAMDC2-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF9-1:7
4.0 MAMDC2-AS1:2
4.1 MAMDC2-AS1:2
5.0 MAMDC2-AS1:2
5.1 MAMDC2-AS1:2
5.2 MAMDC2-AS1:2