Transcript: MANCR:28

Basic information

LNCipedia transcript ID: MANCR:28 
LNCipedia gene ID: MANCR
Location (hg38): chr10:4650817-4678154
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 846 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000430998; ENST00000430998.1; RP11-117P22.1-001; OTTHUMT00000046512.1
Alternative gene names: ENSG00000231298; RP11-117P22.1; ENSG00000231298.1; OTTHUMG00000017576.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4236 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MANCR:28 no no no no

Available literature

  1. Tracy (2018), Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKR1C2-3:1
3.1 lnc-AKR1C2-4:1
4.0 LINC00704:2
4.1 LINC00704:2
5.0 LINC00704:2
5.1 MANCR:8
5.2 MANCR:28