Transcript: MANCR:29

Basic information

LNCipedia transcript ID: MANCR:29 
HGNC Gene Symbol: MANCR    
HGNC Full Gene Name: mitotically associated long non coding RNA
Ensembl Gene ID: ENSG00000231298
Ensembl Transcript ID: ENST00000430998
Location (hg38): chr10:4650185-4678154
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1478 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430998.2; ENST00000430998.6
Alternative gene names: ENSG00000231298.2; LINC00704; ENSG00000231298.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4236 non-coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MANCR:29 no no no no

Available literature

  1. Tracy (2018), Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKR1C2-4:7
4.0 LINC00704:3
4.1 LINC00704:3
5.0 LINC00704:3
5.1 MANCR:9
5.2 MANCR:29