Transcript: MANCR:34

Basic information

LNCipedia transcript ID: MANCR:34 
LNCipedia gene ID: MANCR
Location (hg38): chr10:4650186-4678070
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1393 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00017682
Alternative gene names: XLOC_008703; linc-KLF6-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4236 non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MANCR:34 no no no no

Available literature

  1. Tracy (2018), Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKR1C2-3:3
3.1 lnc-AKR1C2-4:3
4.0 LINC00704:6
4.1 LINC00704:6
5.0 LINC00704:6
5.1 MANCR:14
5.2 MANCR:34