Transcript: MANCR:36

Basic information

LNCipedia transcript ID: MANCR:36 
LNCipedia gene ID: MANCR
RefSeq ID: NR_024475
Location (hg38): chr10:4650185-4678070
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1394 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT011106; NR_024475; NR_024475.1
Alternative gene names: ; LINC00704


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4236 non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MANCR:36 no no no no

Available literature

  1. Tracy (2018), Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKR1C2-4:9
4.0 LINC00704:8
4.1 LINC00704:8
5.0 LINC00704:8
5.1 MANCR:16
5.2 MANCR:36