Transcript: MANCR:40

Basic information

LNCipedia transcript ID: MANCR:40 
HGNC Gene Symbol: MANCR    
HGNC Full Gene Name: mitotically associated long non coding RNA
Ensembl Gene ID: ENSG00000231298
Ensembl Transcript ID: ENST00000443994
Location (hg38): chr10:4651103-4656800
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017909; ENST00000443994; ENST00000443994.1; RP11-117P22.1-003; OTTHUMT00000046514.1; NONHSAT011107
Alternative gene names: XLOC_008703; linc-KLF6-3; ENSG00000231298; RP11-117P22.1; ENSG00000231298.1; OTTHUMG00000017576.1; ENSG00000231298.2; LINC00704; ENSG00000231298.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -356.2766 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MANCR:40 no no no no

Available literature

  1. Tracy (2018), Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKR1C2-3:5
3.1 lnc-AKR1C2-4:5
4.0 LINC00704:9
4.1 LINC00704:9
5.0 LINC00704:9
5.1 MANCR:20
5.2 MANCR:40