Transcript: MAP3K20-AS1:26

Basic information

LNCipedia transcript ID: MAP3K20-AS1:26 
HGNC Gene Symbol: MAP3K20-AS1    
HGNC Full Gene Name: MAP3K20 antisense RNA 1
Ensembl Gene ID: ENSG00000238133
Ensembl Transcript ID: ENST00000422703
Location (hg38): chr2:173166730-173271620
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 447 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422703.1; MLK7-AS1-003; OTTHUMT00000333946.1; NONHSAT075527; ENST00000422703.5
Alternative gene names: ENSG00000238133.2; MLK7-AS1; OTTHUMG00000154109.2; ENSG00000238133.6; ; MAP3K20-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -253.0002 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAP3K20-AS1:26 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SP3-3:3
4.0 MLK7-AS1:5
4.1 MLK7-AS1:5
5.0 MLK7-AS1:5
5.1 MAP3K20-AS1:13
5.2 MAP3K20-AS1:26