Transcript: MAP3K20-AS1:27

Basic information

LNCipedia transcript ID: MAP3K20-AS1:27 
HGNC Gene Symbol: MAP3K20-AS1    
HGNC Full Gene Name: MAP3K20 antisense RNA 1
Ensembl Gene ID: ENSG00000238133
Ensembl Transcript ID: ENST00000419609
Location (hg38): chr2:173166446-173207612
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 575 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419609.1; MLK7-AS1-002; OTTHUMT00000333945.1; ENST00000419609.5
Alternative gene names: ENSG00000238133.2; MLK7-AS1; OTTHUMG00000154109.2; ENSG00000238133.6; ; MAP3K20-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.0076 non-coding 
CPAT coding probability 3.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAP3K20-AS1:27 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SP3-3:4
4.0 MLK7-AS1:6
4.1 MLK7-AS1:6
5.0 MLK7-AS1:6
5.1 MAP3K20-AS1:14
5.2 MAP3K20-AS1:27