Transcript: MAPKAPK5-AS1:17

Basic information

LNCipedia transcript ID: MAPKAPK5-AS1:17 
HGNC Gene Symbol: MAPKAPK5-AS1    
HGNC Full Gene Name: MAPKAPK5 antisense RNA 1
Ensembl Gene ID: ENSG00000234608
Ensembl Transcript ID: ENST00000443596
Location (hg38): chr12:111839767-111841902
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 930 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443596; ENST00000443596.1; MAPKAPK5-AS1-004; OTTHUMT00000280465.1
Alternative gene names: ENSG00000234608; AC003029.1; ENSG00000234608.1; MAPKAPK5-AS1; OTTHUMG00000141273.1; ENSG00000234608.3; ENSG00000234608.7; FLJ39616


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.7169 non-coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPKAPK5-AS1:17 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM116-2:13
3.1 lnc-TMEM116-2:13
4.0 MAPKAPK5-AS1:17
4.1 MAPKAPK5-AS1:17
5.0 MAPKAPK5-AS1:17
5.1 MAPKAPK5-AS1:17
5.2 MAPKAPK5-AS1:17