Transcript: MAPKAPK5-AS1:19

Basic information

LNCipedia transcript ID: MAPKAPK5-AS1:19 
HGNC Gene Symbol: MAPKAPK5-AS1    
HGNC Full Gene Name: MAPKAPK5 antisense RNA 1
Ensembl Gene ID: ENSG00000234608
Ensembl Transcript ID: ENST00000609983
Location (hg38): chr12:111839910-111841710
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 662 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609983.1
Alternative gene names: ENSG00000234608.3; MAPKAPK5-AS1; ENSG00000234608.7; FLJ39616


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -13.4534 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAPKAPK5-AS1:19 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM116-2:15
4.0 MAPKAPK5-AS1:19
4.1 MAPKAPK5-AS1:19
5.0 MAPKAPK5-AS1:19
5.1 MAPKAPK5-AS1:19
5.2 MAPKAPK5-AS1:19