Transcript: MAPKAPK5-AS1:4

Basic information

LNCipedia transcript ID: MAPKAPK5-AS1:4 
LNCipedia gene ID: MAPKAPK5-AS1
Location (hg38): chr12:111839766-111842090
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1476 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA331:2
Alternative gene names: FLJ39616


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.4534 non-coding 
CPAT coding probability 3.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPKAPK5-AS1:4 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 MAPKAPK5-AS1:4
4.1 MAPKAPK5-AS1:4
5.0 MAPKAPK5-AS1:4
5.1 MAPKAPK5-AS1:4
5.2 MAPKAPK5-AS1:4