Transcript: MAPKAPK5-AS1:6

Basic information

LNCipedia transcript ID: MAPKAPK5-AS1:6 
LNCipedia gene ID: MAPKAPK5-AS1
Location (hg38): chr12:111839779-111841975
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 517 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020932; NONHSAT030766
Alternative gene names: XLOC_010202; linc-BRAP-2; FLJ39616


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.0317 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPKAPK5-AS1:6 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM116-2:3
3.1 lnc-TMEM116-2:3
4.0 MAPKAPK5-AS1:6
4.1 MAPKAPK5-AS1:6
5.0 MAPKAPK5-AS1:6
5.1 MAPKAPK5-AS1:6
5.2 MAPKAPK5-AS1:6