Transcript: MBNL1-AS1:3

Basic information

LNCipedia transcript ID: MBNL1-AS1:3 
LNCipedia gene ID: MBNL1-AS1
Ensembl Gene ID: ENSG00000229619
Ensembl Transcript ID: ENST00000608395
Location (hg38): chr3:152262616-152269555
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6585 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608395.1
Alternative gene names: ENSG00000229619.3; MBNL1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 94.7939 coding 
CPAT coding probability 57.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MBNL1-AS1:3 yes no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC106722.1-2:3
4.0 MBNL1-AS1:3
4.1 MBNL1-AS1:3
5.0 MBNL1-AS1:3
5.1 MBNL1-AS1:3
5.2 MBNL1-AS1:3