Transcript: MCPH1-AS1:6

Basic information

LNCipedia transcript ID: MCPH1-AS1:6 
HGNC Gene Symbol: MCPH1-AS1    
HGNC Full Gene Name: MCPH1 antisense RNA 1
Ensembl Gene ID: ENSG00000249898
Ensembl Transcript ID: ENST00000515608
Location (hg38): chr8:6618475-6648807
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2147 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515608.1; CTD-2541M15.1-001; OTTHUMT00000374533.1; NONHSAT124776; ENST00000515608.5
Alternative gene names: ENSG00000249898.3; CTD-2541M15.1; OTTHUMG00000163619.3; ENSG00000249898.7; MCPH1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.5114 non-coding 
CPAT coding probability 16.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MCPH1-AS1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANGPT2-1:4
4.0 MCPH1-AS1:6
4.1 MCPH1-AS1:6
5.0 MCPH1-AS1:6
5.1 MCPH1-AS1:6
5.2 MCPH1-AS1:6