Transcript: MEF2C-AS1:10

Basic information

LNCipedia transcript ID: MEF2C-AS1:10 
HGNC Gene Symbol: MEF2C-AS1    
HGNC Full Gene Name: MEF2C antisense RNA 1
Ensembl Gene ID: ENSG00000248309
Ensembl Transcript ID: ENST00000514092
Location (hg38): chr5:88889445-89465982
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 501 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514092; ENST00000514092.1; CTC-454M9.1-003; OTTHUMT00000369797.2; NONHSAT102697; ENST00000514092.5
Alternative gene names: ENSG00000248309; CTC-454M9.1; ENSG00000248309.1; OTTHUMG00000162630.2; MEF2C-AS1; ENSG00000248309.5; ; ENSG00000248309.6; ENSG00000248309.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7064 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:10 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR3G-5:7
3.1 lnc-RASA1-7:7
4.0 MEF2C-AS1:10
4.1 MEF2C-AS1:10
5.0 MEF2C-AS1:10
5.1 MEF2C-AS1:10
5.2 MEF2C-AS1:10