Transcript: MEF2C-AS1:17

Basic information

LNCipedia transcript ID: MEF2C-AS1:17 
LNCipedia gene ID: MEF2C-AS1
Location (hg38): chr5:88940446-89501451
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1198 bp
Exons: 10
Sources: Nielsen et al.,2014
Alternative transcript names: l_2966_chr5:88236262-88274788_thyroid
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.2284 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:17 no no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASA1-7:20
4.0 MEF2C-AS1:17
4.1 MEF2C-AS1:17
5.0 MEF2C-AS1:17
5.1 MEF2C-AS1:17
5.2 MEF2C-AS1:17