Transcript: MEF2C-AS1:22

Basic information

LNCipedia transcript ID: MEF2C-AS1:22 
LNCipedia gene ID: MEF2C-AS1
Location (hg38): chr5:89150542-89168593
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT102712
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9263 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:22 no no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASA1-7:23
4.0 MEF2C-AS1:22
4.1 MEF2C-AS1:22
5.0 MEF2C-AS1:22
5.1 MEF2C-AS1:22
5.2 MEF2C-AS1:22