Transcript: MEF2C-AS1:23

Basic information

LNCipedia transcript ID: MEF2C-AS1:23 
HGNC Gene Symbol: MEF2C-AS1    
HGNC Full Gene Name: MEF2C antisense RNA 1
Ensembl Gene ID: ENSG00000248309
Ensembl Transcript ID: ENST00000508742
Location (hg38): chr5:89418807-89466398
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 679 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508742; ENST00000508742.1; CTC-454M9.1-014; OTTHUMT00000370014.1; NONHSAT102713
Alternative gene names: ENSG00000248309; CTC-454M9.1; ENSG00000248309.1; OTTHUMG00000162630.2; MEF2C-AS1; ENSG00000248309.5; ; ENSG00000248309.6; ENSG00000248309.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.2171 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:23 no no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR3G-5:14
3.1 lnc-RASA1-7:14
4.0 MEF2C-AS1:23
4.1 MEF2C-AS1:23
5.0 MEF2C-AS1:23
5.1 MEF2C-AS1:23
5.2 MEF2C-AS1:23