Transcript: MEF2C-AS1:6

Basic information

LNCipedia transcript ID: MEF2C-AS1:6 
LNCipedia gene ID: MEF2C-AS1
RefSeq ID: NR_104031
Location (hg38): chr5:88889308-88967279
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1781 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104031; NR_104031.1
Alternative gene names: ; MEF2C-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.5983 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:6 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASA1-7:16
4.0 MEF2C-AS1:6
4.1 MEF2C-AS1:6
5.0 MEF2C-AS1:6
5.1 MEF2C-AS1:6
5.2 MEF2C-AS1:6