Transcript: MEIS1-AS3:1

Basic information

LNCipedia transcript ID: MEIS1-AS3:1 
HGNC Gene Symbol: MEIS1-AS3    
HGNC Full Gene Name: MEIS1 antisense RNA 3
Ensembl Gene ID: ENSG00000226819
Ensembl Transcript ID: ENST00000454167
Location (hg38): chr2:66426735-66433470
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 707 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003310; ENST00000454167.1; MEIS1-AS3-001; OTTHUMT00000328199.2
Alternative gene names: XLOC_002138; linc-SPRED2-1; ENSG00000226819.1; MEIS1-AS3; OTTHUMG00000152832.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.643 non-coding 
CPAT coding probability 8.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEIS1-AS3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRED2-5:1
3.1 lnc-SPRED2-5:1
4.0 MEIS1-AS3:1
4.1 MEIS1-AS3:1
5.0 MEIS1-AS3:1
5.1 MEIS1-AS3:1
5.2 MEIS1-AS3:1