Transcript: MGAT3-AS1:3

Basic information

LNCipedia transcript ID: MGAT3-AS1:3 
HGNC Gene Symbol: MGAT3-AS1    
HGNC Full Gene Name: MGAT3 antisense RNA 1
Ensembl Gene ID: ENSG00000227188
Ensembl Transcript ID: ENST00000432239
RefSeq ID: NR_126469
Location (hg38): chr22:39475807-39476822
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 498 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000432239.1; RP5-1104E15.6-001; OTTHUMT00000321306.1; NR_126469; NR_126469.1
Alternative gene names: ENSG00000227188.1; RP5-1104E15.6; OTTHUMG00000151100.1; MGAT3-AS1; TapSAKI


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.7066 non-coding 
CPAT coding probability 7.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MGAT3-AS1:3 yes no no no

Available literature

  1. Lorenzen (2015), Circulating long noncoding RNATapSaki is a predictor of mortality in critically ill patients with acute kidney injury., Clin. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS19BP1-1:1
4.0 MGAT3-AS1:3
4.1 MGAT3-AS1:3
5.0 MGAT3-AS1:3
5.1 MGAT3-AS1:3
5.2 MGAT3-AS1:3