Transcript: MIF-AS1:4

Basic information

LNCipedia transcript ID: MIF-AS1:4 
LNCipedia gene ID: MIF-AS1
Ensembl Gene ID: ENSG00000273295
Ensembl Transcript ID: ENST00000609510
Location (hg38): chr22:23901432-23907068
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5637 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609510.1
Alternative gene names: ENSG00000273295.1; AP000350.5; LOC284889; MIF-AS; AP000350.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.9458 non-coding 
CPAT coding probability 18.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIF-AS1:4 no no no no

Available literature

  1. Ma (2016), Association Between MIF-AS rs755622 and Nephrolithiasis Risk in a Chinese Population., Med. Sci. Monit.
  2. Jha (2013), Variations in ncRNA gene LOC284889 and MIF-794CATT repeats are associated with malaria susceptibility in Indian populations., Malar. J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP000350.4.1-1:4
4.0 MIF-AS1:4
4.1 MIF-AS1:4
5.0 MIF-AS1:4
5.1 MIF-AS1:4
5.2 MIF-AS1:4