Transcript: MINCR:5

Basic information

LNCipedia transcript ID: MINCR:5 
LNCipedia gene ID: MINCR
RefSeq ID: NR_120683
Location (hg38): chr8:143280822-143281700
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120683; NR_120683.1
Alternative gene names: TCONS_00015189; MINCR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -68.8079 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MINCR:5 no no no no

Available literature

  1. Doose (2015), MINCR is a MYC-induced lncRNA able to modulate MYC's transcriptional network in Burkitt lymphoma cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOP1MT-2:13
4.0 MINCR:5
4.1 MINCR:5
5.0 MINCR:5
5.1 MINCR:5
5.2 MINCR:5