Transcript: MIR1-1HG-AS1:38

Basic information

LNCipedia transcript ID: MIR1-1HG-AS1:38 
LNCipedia gene ID: MIR1-1HG-AS1
Location (hg38): chr20:62544343-62551526
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2302 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000174403.11|ENST00000412495.1
Alternative gene names: FLJ30313


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.9398 non-coding 
CPAT coding probability 23.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR1-1HG-AS1:38 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 C20orf166-AS1:14
5.0 C20orf166-AS1:14
5.1 MIR1-1HG-AS1:13
5.2 MIR1-1HG-AS1:38