Transcript: MIR1-1HG-AS1:52

Basic information

LNCipedia transcript ID: MIR1-1HG-AS1:52 
HGNC Gene Symbol: MIR1-1HG-AS1    
HGNC Full Gene Name: MIR1-1HG antisense RNA 1
Ensembl Gene ID: ENSG00000174403
Ensembl Transcript ID: ENST00000621644
Location (hg38): chr20:62546216-62546675
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 460 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621644.1
Alternative gene names: ENSG00000174403.15; C20orf166-AS1; FLJ30313; MIR1-1HG-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.0856 non-coding 
CPAT coding probability 38.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MIR1-1HG-AS1:52 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 C20orf166-AS1:12
4.1 C20orf166-AS1:12
5.0 C20orf166-AS1:12
5.1 MIR1-1HG-AS1:27
5.2 MIR1-1HG-AS1:52